If you really need the cargo box space you could modify your system to use a deployable (folding) panel and simply rely on it when you carry the cargo box. You could connect the deployable panel in parallel with the existing panel or put in appropriate connections to use one or the other. Parallel is probably easiest and may make the most sense.
That written, I am not familiar with the FWC OEM solar panel charger implementation but having done my own system I have the perspective that it should not be hard to add a deployable panel to your existing system.
Probably the first question is if the Solar Controller you have is sufficient and then how/where to connect into the existing OEM system.
Hopefully someone who has done this with their OEM system will comment.
Regards,
Craig